Notable Publications by Department Members
Behner, A., Prusova, N., Karabin, M., Jelinek, L., Hajslova, J., Stranska, M. (2025) Pulsed Electric Fields Reshape the Malting Barley Metabolome: Insights from UHPLC-HRMS/MS. Molecules, 30(19), 3953, DOI 10.3390/molecules30193953, IF = 4,6 (Q2), OA
Belackova V, Petruzelka B, Cihak J, Michailidu J, Mravcik V. Getting "The whole picture": A review of international research on the outcomes of regulated cannabis supply. Int J Drug Policy. 2025 Aug;142:104796. doi: 10.1016/j.drugpo.2025.104796. Q1, IF: 4,4, OA
Danda M, Chvátalová B, Nečasová D, Křížová I, Ruml T, Rumlová M. Bridging predictions with experimental reality: In vitro evaluation of phenolic natural products as SARS-CoV-2 exoribonuclease inhibitors. Biomed Pharmacother. 2025 Sep 23;192:118588. doi: 10.1016/j.biopha.2025.118588. PMID: 40991985, IF 7.5, Q1, OA.
Husakova M., Bezdicek M., Branska B., Sedlar K., Patakova P. Pigment Formation by Monascus pilosus DBM 4361 in Submerged Liquid Culture. (2025) Journal of Agricultural and Food Chemistry 73 (42) 26900-26909. IF 6.2, Q1, OA
Husakova M., Branska B., Patakova P. Coordinated Synthesis of Pigments Differing in Side Chain Length in Monascus purpureus and Investigation of Pigments and Citrinin Relation. (2025) Journal of Agricultural and Food Chemistry 73 (3) 2033-2043. IF 6.2, Q1, OA
Husakova M., Patakova P. Purified Monascus Pigments: Biological Activities and Mechanisms of Action. (2025) Journal of Natural Products, 88 (2), 607-615. IF 3.6, Q1, OA
Karaoglan, S.Y., Jung, R., Jelínek, L., Karabín, M., Kinčl, T., Dostálek, P. (2025) Aroma Potential of a New Maltose-Negative Yeast Isolate. Foods, 14(19), 3357, DOI 10.3390/foods14193357, IF = 5,1 (Q1), OA
Koppova K, Burianova L, Patakova P, Branska B. Lignocellulose-derived inhibitors can extend residence of Clostridium beijerinckii in active solventogenic state. Bioresour Bioprocess. 2025 Apr 9;12(1):31. doi: 10.1186/s40643-025-00871-y. IF 5,1 Q1, OA
Mach, J., Krauz, L., Páta, P., & Halecky, M. (2024). Development of low-cost multifunctional robotic apparatus for high-throughput plant phenotyping. Smart Agricultural Technology, 9, 1-17, Article 100654. https://doi.org/10.1016/j.atech.2024.100654, IF 5,7, Q1, OA
Mach, J., Svaty, Z., Soupa, O., Nouzovsky, L., & Halecky, M. (2025). Implementation of an SfM-MVS-based photogrammetry approach for detailed 3D reconstruction of plants. Plant Methods, 21(1), 24, Article 127. https://doi.org/10.1186/s13007-025-01445-x, IF 4,4, Q1, OA
Machková, A., Zampieri, L., Czapka, T., Hrudka, J., Vaňková, E. (dvojí afilace), Khun, J., Martines, E., Brotánková, J., Cordaro, L., De Masi, G., Scholtz, V. (2025). Modified protocol comparing sporicidal activity of different non-thermal plasma generating devices. Scientific Reports, 15(1), 7893. https://doi.org/10.1038/s41598-025-91279-3 (Q1, IF 3.9, OA)
Maršík D., Danda M., Otta J., Thoresen P. P., Mat́átková O., Rova U., Christakopoulos P., Matsakas L. & Masák J. (2024) Preparation and biological activity of lignin–silver hybrid nanoparticles. ACS Omega, 9 (48), 47765-47787, IF 4.3, Q2, OA.
Michailidu A., Miskovska A., Jarosova I., Cejkova A., Matatkova O. (2025). Antibacterial properties of silver and gold nanoparticles synthesized using Cannabis sativa waste extract against Pseudomonas aeruginosa. Journal of Canabis Research, 7 (1), DOI 10.1186/s42238-025-00272-0. IF 4,3, Q1
Michailidu, J., Maťátková, O., Čejková, A. & Masak, J., Chemical Conversations. Molecules 30: 431. IF 4,6; Q2; OA
Miskovska A., Kulisova M., Matatkova O., Michailidu J., Cejkova A., Jarosova Kolouchova I. (2025) Green AgNPs from grapevine pruning waste: Synthesis and activity against P. Aeruginosa. Environmentl Technology and Innovation, 39, DOI 10.1016/j.eti.2025.104287, IF 7,1, Q1
Palyzová A., Kulišová M., Majtán K., Fous K., Jarošová I., & Řezanka T. (2025). Precursor direct biosynthesis of odd-chain polyunsaturated fatty acids by oomycete Pythium. Food Chemistry, 483, 144204, IF 9.7, Q1, OA.
Pribyl, T., Skoch, K ; Bavol, D ; Krízová, I.; Zelenka, J ; Ruml, T ; Lang, KM ; Kirakci, K (2025).Modulating the anti-cancer photodynamic efficiency of molybdenum-iodide nanoclusters via ligand design. JOURNAL OF MATERIALS CHEMISTRY B, Volume 13, Issue 21, Page 6256-6264, DOI 10.1039/d5tb00401b, IF 5.8, Q2, OA
Prusová, N., Karabin, M., Jelinek, L., Chrpova, J., Ovesna, J., Svoboda, P., Dolezalova, T., Behner, A., Hajslova, J., Stranska, M. (2024) Application of Pulsed Electric Field During Malting: Impact on Fusarium Species Growth and Mycotoxin Production. Toxins, 16(12), 537, DOI 10.3390/toxins16120537, IF = 4,0 (Q1), OA
Tuan, D.A., Uyen, P.V.N., Khuon, N.V., Binh, L.A. & Masak, J.: Innovative antifungal strategies: enhanced biofilm inhibition of Candida albicans by a modified tea tree oil formulation, Frontiers in Microbiology 15. IF 4,5; Q2
Vaňková, E. (dvojí afilace), Obrová, K., Hodek, J., Machková, A., Kašparová, P., Khun, J., Lokajová E., Ulrychová L., Fürhacker P., Sláma M., Přikryl R., Kalina L., Krobot Š., Lion T., Weber J., Scholtz, V. (2025). Scaled-up non-thermal plasma-generating device Plasmatico enables effective and harmless disinfection of personal protective equipment. Scientific Reports, 15(1), 35631. https://doi.org/10.1038/s41598-025-19520-7 (Q1, IF 3.9, OA)
Vaštík, P., Brunner, J., Jung, R., Klempová, T., Furdíková, K., Šmogrovičová, D., Dostálek, P. (2025) Functional Non-Alcoholic Beer Fermented with Potential Probiotic Yeasts. Beverages, 11(5), 140, DOI10.3390/beverages11050140, IF = 2,7 (Q3), OA
Wu Z., Thoresen P. P., Maršík D., Matsakas L., Kulišová M., Fous K., Maťátková O., Masák J., Rova U., Ytreberg E., Granhag L., Christakopoulos P. & Shi Y. (2024) High acetone soluble organosolv lignin extraction and its application towards green antifouling and wear-resistant coating. International Journal of Biological Macromolecules, 137456, IF 8.5, Q1, OA.
Skleničková, K., Suchopárová, E., Abbrent, S., Pokorný, V., Kočková, O., Nevoralová, M., Cajthaml, T., Strejček, M., Uhlík, O., Halecký, M., & Beneš, H. (2024). Biodegradation of aliphatic polyurethane foams in soil: Influence of amide linkages and supramolecular structure. Science of the Total Environment, 912, 169062. IF 8,2, Q1 https://doi.org/https://doi.org/10.1016/j.scitotenv.2023.169062
Sterba J (trojí afilace), Puncochar M, Branyik T. (dvojí afilace) The effect of hydrodynamic cavitation on isomerization of hop alpha-acids, wort quality and energy consumption during wort boiling. Food and Bioproducts Procesing 144, 214-219, 2024, https://doi.org/10.1016/j.fbp.2024.02.001 (Q2, IF 3,5)
Majtan K. (dvojí afilace), Klimentic M, Martinik J, Kulisova M, Jarosova I, Potocar T, Branyik T (dvojí afilace). Surface properties of mycoparasitic Pythium species and their interaction with model materials. Heliyon 10(11), e31800, 2024, https://doi.org/10.1016/j.heliyon.2024.e31800 (Q1, IF 3,4) OA
Karabín, M., Jelínek, L., Průšová, N., Ovesná, J., & Stránská, M. (2024). Pulsed electric field treatment applied to barley before malting reduces Fusarium pathogens without compromising the quality of the final malt. Lwt-Food Science and Technology, 206, 116575. IF = 6,0 (Q1), OA.
Miškovská A., Michailidu J., Jarošová Kolouchová I., Barone L., Gornati R., Montali A., Tettamanti G., Berini F, Marinelli F, Masák J., Čejková A., Maťátková O., Biological activity of silver nanoparticles synthesized using viticultural waste, Microbial Pathogenesis 20, 106613, 2024, IF = 3,3 (Q2), OA
Michailidu, J., Miškovská, A., Jarošová, I., Čejková, A., Maťátková, O. Bimetallic nanoparticle production using Cannabis sativa and Vitis vinifera waste extracts, RSC Advances 14, 5309, 2024, IF = 3,9 (Q2), OA
Kulišová M., Rabochová M., Lorinčík J., Brányik T., Hrudka J., Scholtz V., Jarošová Kolouchová I. (2024) Exploring non-thermal plasma and UV radiation as biofilm control strategies against foodborne filamentous fungal contaminants. Foods 13, 1054, IF = 4,7 (Q1), OA
Kulišová M., Rabochová M., Lorinčík J., Maťátková O., Brányik T., Hrudka J., Scholtz V., Jarošová Kolouchová I. (2024) Comparative assessment of UV-C radiation and non-thermal plasma for inactivation of foodborne fungal spores. RSC Advances 14, 16835-16845, IF = 3,9 (Q2), OA
Rabochová M., Kulišová M., Lorinčík J., Maťátková O., Khun J., Scholtz V., Jarošová Kolouchová I. (2024) Assessing the antimicrobial efficacy of nonthermal plasma treatment on filamentous fungi spores and biofilms. Food Control 163, 110522, IF = 5,6 (Q1)
Majtán K., Klimentic M., Martiník J., Kulišová M., Jarošová I., Potočár T., Brányik T(dvojí afiliace). (2024) Surface properties of mycoparasitic Pythium species and their interaction with model materials. Heliyon, e31800, IF = 3,4 (Q1), OA
Maršík D., Thoresen P., Maťátková O., Masák J., Sialini P., Rova U., Tsikourkitoudi V., Christakopoulos P., Matsakas L., Jarošová I. Synthesis and Characterization of Lignin-Silver Nanoparticles. MOLECULES, 2024, vol. 29. ISSN 1420-3049, IF = 4,2 (Q2), OA
Maršík D., Maťátková O., Kolkova A., Masák J. Exploring the antimicrobial potential of chitosan nanoparticles: synthesis, characterization and impact on Pseudomonas aeruginosa virulence factors. Nanoscale Advances, 2024, vol. 6, s. 3093-3105. ISSN 2516-0230, IF = 4,6 (Q2), OA
Bouazizi, A., Obrová, K., Vaňková, E. (dvojí afiliace), Machková, A., Khun, J., Hadravová, R., Hodek J., Ulrychová L., Trabelsi A., Weber J., Zampieri L., Avino F., Furno I., Scholtz V., Lion, T. (2024). 3D-printed devices for optimized generation of cold atmospheric plasma to improve decontamination of surfaces from respiratory pathogens. International Journal of Bioprinting, 1-18. IF = 6,8 (Q1), OA
Balák, J.; Drábová, L.; Ilko, V.; Maršík, D.; Jarošová Kolouchová, I. Preliminary Investigation of Fruit Mash Inoculation with Pure Yeast Cultures: A Case of Volatile Profile of Industrial-Scale Plum Distillates. Foods 2024, 13, 1955. IF=4,7 (Q1), OA
Balak J, Drábová L, Maťátková O, Doležal M, Marsík D, Jarosova Kolouchova I. Differences in Volatile Profiles and Sensory Characteristics in Plum Spirits on a Production Scale. Fermentation. 2024; 10(5):235 IF=3,3 (Q2), OA
Timkina E, Kulišová M, Palyzová A, Marešová H, Maťátková O, Řezanka T, et al. (2024) Isolation and characterization of multiple-stress tolerant bacteria from radon springs. PLoS ONE 19(3) IF=2,9 (Q1), OA
Branska, B., Koppova, K., Husakova, M., Patakova P. (2024). Application of fed-batch strategy to fully eliminate the negative effect of lignocellulose-derived inhibitors in ABE fermentation. Biotechnology for Biofuels and Bioproducts 17, 87. https://doi.org/10.1186/s13068-024-02520-6; IF 3,3 Q2 OA
Patakova P., Vasylkivska M., Sedlar K., Jureckova K., Bezdicek M., Lovecka P., Branska B., Kastanek P., Krofta K. (2024) Whole genome sequencing and characterization of Pantoea agglomerans DBM 3797, endophyte, isolated from fresh hop (Humulus lupulus L.), Frontiers in Microbiology, 15:1305338. IF 4,0, Q2, OA
Danda M, Klimesova A, Kuskova K, Dostalkova A, Pagacova A, Prchal J, Kapisheva M, Ruml T, Rumlova M. 2024. Biochemical characterization of naturally occurring mutations in SARS-CoV-2 RNA-dependent RNA polymerase. Protein Sci 33:e5103. IF 4,5; Q1
Dostalkova A, Krizova I, Junkova P, Rackova J, Kapisheva M, Novotny R, Danda M, Zvonarova K, Sinkovec L, Vecerkova K, Bednarova L, Ruml T, Rumlova M. 2024. Unveiling the DHX15-G-patch interplay in retroviral RNA packaging. Proc Natl Acad Sci U S A 121:e2407990121. IF 9,4; Q1
Dostalkova A, Zdenkova K, Bartackova J, Cermakova E, Kapisheva M, Lopez Marin MA, Kouba V, Sykora P, Chmel M, Bartos O, Dresler J, Demnerova K, Rumlova M, Bartacek J. 2024. Prevalence of SARS-CoV-2 variants in Prague wastewater determined by nanopore-based sequencing. Chemosphere 351:141162.IF 8,1;. Q1
Chayka A, Danda M, Dostalkova A, Spiwok V, Klimesova A, Kapisheva M, Zgarbova M, Weber J, Ruml T, Rumlova M, Janeba Z. 2024. Developing Allosteric Inhibitors of SARS-CoV-2 RNA-Dependent RNA Polymerase. ChemMedChem doi:10.1002/cmdc.202400367:e202400367. IF 3,1; Q1
Pribyl T, Rumlova M, Mikyskova R, Reinis M, Kana A, Skoch K, Zelenka J, Kirakci K, Ruml T, Lang K. 2024. PEGylated Molybdenum-Iodine Nanocluster as a Promising Radiodynamic Agent against Prostatic Adenocarcinoma. Inorg Chem 63:4419-4428. IF 4,3; Q1
KIRAKCI K., POLA R., TAVARES M., PECHAR M., PŘIBYL T., KŘÍŽOVÁ I., ZELENKA J., RUML T., ETRYCH T., LANG K. Radiosensitizing molybdenum iodide nanoclusters conjugated with a biocompatible N-(2-hydroxypropyl)methacrylamide copolymer: a step towards radiodynamic therapy. Materials Advances, 2023, vol. 4, s. 6389-6395. ISSN 2633-5409. IF 5,2; Q2
NAVRÁTILOVÁ T., PINECKEROVÁ D., TATAR A., KŘÍŽOVÁ I., HAVLÍK M., DROZDOVÁ M., HAJDUCH J., ZELENKA J., AZENBACHER P., DOLENSKÝ B. Chlorin spiro-Tröger's base as a prospective photosensitizer for photodynamic therapy of cancer. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, 2024, vol. 453. ISSN 1010-6030. IF 4,1; Q2
Zumaya A.L.V., Pavlícková V.S., Rimpelova S., Stejdírová M., Fulem M., Krízová I.,Ulbrich P., Rezanka P., Hassouna F. PLGA-based nanocarriers for combined delivery of colchicine and purpurin 18 in cancer therapy: Multimodal approach employing cancer cell spheroids. INTERNATIONAL JOURNAL OF PHARMACEUTICS, 2024, vol. 657, DOI 10.1016/j.ijpharm.2024.124170. IF 5,3; Q1
Najmanová, P., Steinová, J., Czinnerová, M., Němeček, J., Špánek, R., Knytl, V., & Halecký, M. (2022). Thermally Enhanced Biodegradation of TCE in Groundwater. Water, 14(21), 3456. IF = 3,53 (Q2), OA
Ng, CA; Pernica, M; Litvanova, K; Kolouchova, I; Branyik, T. Biocontrol Using Pythium oligandrum during Malting of Fusarium-Contaminated Barley. Fermentation 9, 257, 2023, IF 3,7 (Q2)
Hyrslova, I; Krausova, G; Mrvikova, I; Stankova, B; Branyik, T; Malinska, H; Huttl, M; Kana, A; Doskocil, I. Functional properties of Dunaliella salina and its positive effect on probiotics. Marine Drugs 20, 781, 2022, IF 5,4 (Q1)
Éliás AJ, Balogh L, Brányik T (dvojí aff), Mák E, Csajbókné Csobod E, Veresné Bálint M, Benedek C. Xanthohumol-enriched beer does not exert antitumorigenic effects on HeLa cell line in vivo. Molecules 28, 1070, 2023, IF 4,6 (Q2)
Ilpars, E (dvojí aff); Titlová, Š; Hanzalíková, K (dvojí aff); Křížová, I; Brányik, T. (dvojí aff) Alcohol-Free Beer Produced Using Maltose-Negative Wine Yeast Saccharomyces cerevisiae with Probiotic Potential. Fermentation 9, 805, 2023, IF 3,7 (Q2)
Bartáčková J, Kouba V, Dostálková A, Čermáková E, Lopez Marin MA, Chmel M, Milanová M, Demnerová K, Rumlová M, Sýkora P et al: Monitoring of monkeypox viral DNA in Prague wastewater. Science of The Total Environment 2023, 902:166110. IF 9.8, (Q1), OA
Lopez Marin MA, Zdenkova K, Bartackova J, Cermakova E, Dostalkova A, Demnerova K, Vavruskova L, Novakova Z, Sykora P, Rumlova M, Bartacek J: Monitoring COVID-19 spread in selected Prague's schools based on the presence of SARS-CoV-2 RNA in wastewater. Science of The Total Environment 2023, 871:161935. IF 9.8, (Q1), OA
Selinger M, Novotný R, Sýs J, Roby JA, Tykalová H, Ranjani GS, Vancová M, Jaklová K., Kaufman F, Bloom ME, Rumlová M, Štěrba J. et al: Tick-borne encephalitis virus capsid protein induces translational shutoff as revealed by its structural–biological analysis. Journal of Biological Chemistry 2022, 298(11):102585. IF 4.8, (Q2), OA
Skácel J, Djukic S, Baszczyňski O, Kalčic F, Bílek T, Chalupský K, Kozák J, Dvořáková A, Tloušt’ová E, Král’ová Z. Rumlová M. et al: Design, Synthesis, Biological Evaluation, and Crystallographic Study of Novel Purine Nucleoside Phosphorylase Inhibitors. Journal of Medicinal Chemistry 2023, 66(10):6652-6681. IF 7.3, (Q1), OA
Kolek, J (dvojí afilace); Driml, M; Kumzák, M; Soukup, P; Szendzielarz, F; Simera, M; Branská, B; Patáková, P. Use of common carp waste for pigment production by Monascus purpureus. Kvasny Prumysl 2023, Volume 69, pp. 686-691. DOI10.18832/kp2023.69.686
Vaštík P. (dvojí afilace), Sulo P., Rosenbergová Z., Klempová T., Dostálek P., Šmogrovičová D. (2023): Novel Saccharomyces cerevisiae x Saccharomyces mikatae Hybrids for Non-alcoholic Beer Production. Fermentation 9(3), 221; https://doi.org/10.3390/fermentation9030221 IF 3,7, (Q2) OA
Maria-Hormigos R., Mayorga-Martinez C.C., Kinčl T., Pumera M. (2023): Nanostructured Hybrid BioBots for Beer Brewing. ACS Nano 17(8) 7595-7603; IF 17,1, (Q1)
Kulišová M., Olga Maťátková, Tomáš Brányik, Jaroslav Zelenka, Lucie Drábová, Irena Jarošová Kolouchová: Detection of microscopic filamentous fungal biofilms – Choosing the suitable methodology, Journal of Microbiological Methods, Volume 205, 2023, 106676,
https://doi.org/10.1016/j.mimet.2023.106676. IF 2,2 (Q3)
Vrublevskaya M., Thi Tra My Nguyenová, Lucie Drábová, Petra Lovecká, Blanka Vrchotová, Olga Maťátková, Markéta Kulišová, Irena Kolouchová: Biodiversity of Vitis vinifera endophytes in conventional and biodynamic vineyard. Czech J. Food Sci. 2023, 41(1):44-53 | DOI: 10.17221/200/2022-CJFS IF 1,3 (Q4)
Timkina E., Irena Jarošová Kolouchová, Lucie Kyselová, Andrea Palyzová, Denis J. Murphy, Tomáš Řezanka: Off-line two-dimensional LC–tandem MS of menaquinones from thermophilic bacteria, Food Chemistry 431, Nr. 137112; DOI: 10.1016/j.foodchem.2023.137112. IF 8,8; (Q1)
Scholtz V., Jirešová J., Fišer L., Obrová K., Sláma M., Klenivskyi M., Khun J., Vaňková E. (dvojitá afilace): Non-thermal plasma disinfecting procedure is harmless to delicate items of everyday use. Scientific Reports, 13(1), 2023, 15479. IF 4.6, (Q1), OA
Kolarik M., Vrublevskaya M., Kajzrova S., Kulisova M., Kolouchova Jarosova I. Taxonomic analysis reveals host preference of rare fungi in endophytes of Vitis vinifera from the Czech Republic. Folia Microbiologica, DOI10.1007/s12223-023-01066-8, 2023. IF 2,6; (Q3)
Ng C.A.,Pernica M., Litvanova K., Kolouchova I., Branyik T. Biocontrol Using Pythium oligandrum during Malting of Fusarium-Contaminated Barley. Fermentation-Basel, 9 (3), 2023, IF 3,7; (Q2), OA
Vrublevskaya M.,Nguyenová, T..TM., Drábová L., Lovecká P., Vrchotová B., Matátková O., Kulisová M., Kolouchová Jarosova I. Biodiversity of Vitis vinifera endophytes in conventional and biodynamic vineyard. Czech Journal of Food Sciences, DOI10.17221/200/2022-CJFS, 2023, IF 1,3; (Q4)